IL_5DOX_159

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAACC*GGGUGCCCCGCGAGGGGAGCC

Length

27 nucleotides

Bulged bases

5DOX|1|1a|C|1030|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DOX|1|1a|G|1002
5DOX|1|1a|G|1003
5DOX|1|1a|A|1004
5DOX|1|1a|A|1005
5DOX|1|1a|C|1006
5DOX|1|1a|C|1007
*
5DOX|1|1a|G|1022
5DOX|1|1a|G|1023
5DOX|1|1a|G|1024
5DOX|1|1a|U|1025
5DOX|1|1a|G|1026
5DOX|1|1a|C|1027
5DOX|1|1a|C|1028
5DOX|1|1a|C|1029
5DOX|1|1a|C|1030
5DOX|1|1a|G|1030|||A
5DOX|1|1a|C|1030|||B
5DOX|1|1a|G|1030|||C
5DOX|1|1a|A|1030|||D
5DOX|1|1a|G|1031
5DOX|1|1a|G|1032
5DOX|1|1a|G|1033
5DOX|1|1a|G|1034
5DOX|1|1a|A|1035
5DOX|1|1a|G|1036
5DOX|1|1a|C|1037
5DOX|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains