3D structure

PDB id
5DOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UGAGUAG*CGAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DOX_187 not in the Motif Atlas
Homologous match to IL_7RQB_007
Geometric discrepancy: 0.0672
The information below is about IL_7RQB_007
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_76042.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

5DOX|1|2A|U|239
5DOX|1|2A|G|240
5DOX|1|2A|A|241
5DOX|1|2A|G|242
5DOX|1|2A|U|243
5DOX|1|2A|A|244
5DOX|1|2A|G|245
*
5DOX|1|2A|C|253
5DOX|1|2A|G|254
5DOX|1|2A|A|255
5DOX|1|2A|A|256
5DOX|1|2A|A|257
5DOX|1|2A|G|258

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 28
50S ribosomal protein L35
Chain 2P
50S ribosomal protein L15

Coloring options:


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