IL_5DOX_315
3D structure
- PDB id
- 5DOX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAACCC*GGACUGAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DOX_315 not in the Motif Atlas
- Homologous match to IL_6CZR_131
- Geometric discrepancy: 0.1546
- The information below is about IL_6CZR_131
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30149.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5DOX|1|2a|G|450
5DOX|1|2a|A|451
5DOX|1|2a|A|452
5DOX|1|2a|A|453
5DOX|1|2a|C|454
5DOX|1|2a|C|455
5DOX|1|2a|C|456
*
5DOX|1|2a|G|475
5DOX|1|2a|G|476
5DOX|1|2a|A|477
5DOX|1|2a|C|479
5DOX|1|2a|U|480
5DOX|1|2a|G|481
5DOX|1|2a|A|482
5DOX|1|2a|C|483
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2p
- 30S ribosomal protein S16
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