3D structure

PDB id
5DOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DOX_359 not in the Motif Atlas
Geometric match to IL_8VTW_065
Geometric discrepancy: 0.0736
The information below is about IL_8VTW_065
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.4
Basepair signature
cWW-cWW-tSH-cWW-R
Number of instances in this motif group
28

Unit IDs

5DOX|1|1A|G|1666
5DOX|1|1A|G|1667
5DOX|1|1A|A|1668
5DOX|1|1A|A|1669
*
5DOX|1|1A|U|1993
5DOX|1|1A|C|1994

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1E
50S ribosomal protein L3
Chain 1O
50S ribosomal protein L14

Coloring options:


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