3D structure

PDB id
5DOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GU*GAC
Length
5 nucleotides
Bulged bases
5DOX|1|1a|A|397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DOX_362 not in the Motif Atlas
Homologous match to IL_4LFB_002
Geometric discrepancy: 0.1554
The information below is about IL_4LFB_002
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
132

Unit IDs

5DOX|1|1a|G|44
5DOX|1|1a|U|45
*
5DOX|1|1a|G|396
5DOX|1|1a|A|397
5DOX|1|1a|C|398

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1p
30S ribosomal protein S16

Coloring options:


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