IL_5DOX_376

3D structure

PDB id

5DOX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOX_376 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0566

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5DOX|1|2A|G|1666
5DOX|1|2A|G|1667
5DOX|1|2A|A|1668
5DOX|1|2A|A|1669
5DOX|1|2A|C|1670
5DOX|1|2A|U|1671
5DOX|1|2A|C|1672
5DOX|1|2A|U|1673
5DOX|1|2A|G|1674
*
5DOX|1|2A|C|1990
5DOX|1|2A|U|1991
5DOX|1|2A|G|1992
5DOX|1|2A|U|1993
5DOX|1|2A|C|1994

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14