IL_5DOY_004
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGGAG*CGUGGAUC
- Length
- 13 nucleotides
- Bulged bases
- 5DOY|1|1A|G|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DOY_004 not in the Motif Atlas
- Homologous match to IL_7RQB_004
- Geometric discrepancy: 0.0566
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
5DOY|1|1A|G|81
5DOY|1|1A|G|82
5DOY|1|1A|G|83
5DOY|1|1A|A|84
5DOY|1|1A|G|85
*
5DOY|1|1A|C|97
5DOY|1|1A|G|98
5DOY|1|1A|U|99
5DOY|1|1A|G|100
5DOY|1|1A|G|102
5DOY|1|1A|A|103
5DOY|1|1A|U|104
5DOY|1|1A|C|105
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 12
- 50S Ribosomal Protein L29
- Chain 1Y
- 50S Ribosomal Protein L24
Coloring options: