IL_5DOY_041

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUGGC*GCCAUCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DOY|1|1A|G|1058
5DOY|1|1A|G|1059
5DOY|1|1A|U|1060
5DOY|1|1A|G|1062
5DOY|1|1A|G|1063
5DOY|1|1A|C|1064
*
5DOY|1|1A|G|1074
5DOY|1|1A|C|1075
5DOY|1|1A|C|1076
5DOY|1|1A|A|1077
5DOY|1|1A|U|1078
5DOY|1|1A|C|1079
5DOY|1|1A|C|1080

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains