IL_5DOY_075
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 5DOY|1|1A|A|1938, 5DOY|1|1A|C|1941, 5DOY|1|1A|U|1944, 5DOY|1|1A|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DOY_075 not in the Motif Atlas
- Homologous match to IL_7RQB_077
- Geometric discrepancy: 0.0545
- The information below is about IL_7RQB_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DOY|1|1A|C|1934
5DOY|1|1A|G|1935
5DOY|1|1A|A|1936
5DOY|1|1A|A|1937
5DOY|1|1A|A|1938
5DOY|1|1A|5MU|1939
5DOY|1|1A|U|1940
5DOY|1|1A|C|1941
5DOY|1|1A|5MC|1942
5DOY|1|1A|U|1943
5DOY|1|1A|U|1944
5DOY|1|1A|G|1945
*
5DOY|1|1A|C|1961
5DOY|1|1A|5MC|1962
5DOY|1|1A|U|1963
5DOY|1|1A|G|1964
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S Ribosomal Protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1w
- Transfer RNA; tRNA
Coloring options: