IL_5DOY_154

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOY_154 not in the Motif Atlas

Homologous match to IL_4LFB_039

Geometric discrepancy: 0.1969

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5DOY|1|1a|G|993
5DOY|1|1a|A|994
5DOY|1|1a|C|995
5DOY|1|1a|A|996
5DOY|1|1a|U|997
*
5DOY|1|1a|A|1044
5DOY|1|1a|C|1045

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1c

30S Ribosomal Protein S3

Chain 1n

30S Ribosomal Protein S14