IL_5DOY_208

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUAG*CUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOY_208 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3398

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5DOY|1|2A|A|870
5DOY|1|2A|U|871
5DOY|1|2A|A|872
5DOY|1|2A|G|873
*
5DOY|1|2A|C|904
5DOY|1|2A|U|905
5DOY|1|2A|G|906
5DOY|1|2A|U|907

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S Ribosomal Protein L16

Chain 2Z

50S Ribosomal Protein L25

Chain 2w

Transfer RNA; tRNA