IL_5DOY_274

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

5DOY|1|2A|A|2572, 5DOY|1|2A|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DOY_274 not in the Motif Atlas

Geometric match to IL_7RQB_098

Geometric discrepancy: 0.062

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5DOY|1|2A|C|2512
5DOY|1|2A|G|2513
*
5DOY|1|2A|C|2571
5DOY|1|2A|A|2572
5DOY|1|2A|C|2573
5DOY|1|2A|G|2574

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S Ribosomal Protein L3

Chain 2N

50S Ribosomal Protein L13

Chain 2w

Transfer RNA; tRNA