IL_5DOY_369

3D structure

PDB id

5DOY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCUGUGAACC*GGGGAGG

Length

17 nucleotides

Bulged bases

5DOY|1|2A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DOY|1|2A|C|2128
5DOY|1|2A|C|2129
5DOY|1|2A|U|2130
5DOY|1|2A|G|2131
5DOY|1|2A|U|2132
5DOY|1|2A|G|2133
5DOY|1|2A|A|2134
5DOY|1|2A|A|2135
5DOY|1|2A|C|2136
5DOY|1|2A|C|2137
*
5DOY|1|2A|G|2154
5DOY|1|2A|G|2155
5DOY|1|2A|G|2156
5DOY|1|2A|G|2157
5DOY|1|2A|A|2158
5DOY|1|2A|G|2159
5DOY|1|2A|G|2160

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains