IL_5E7K_048

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_048 not in the Motif Atlas

Geometric match to IL_4LFB_047

Geometric discrepancy: 0.0827

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5E7K|1|13|G|1061
5E7K|1|13|U|1062
5E7K|1|13|C|1063
*
5E7K|1|13|G|1193
5E7K|1|13|U|1194
5E7K|1|13|C|1195

Current chains

Chain 13

16S rRNA

Nearby chains

Chain 1I

30S ribosomal protein S10

Chain 2E

30S ribosomal protein S3

Chain 4E

30S ribosomal protein S5

Chain 4K

mRNA

Chain 5I

30S ribosomal protein S14 type Z

Chain 8E

30S ribosomal protein S9