3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
5E7K|1|14|G|801, 5E7K|1|14|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5E7K_082 not in the Motif Atlas
Homologous match to IL_4WF9_021
Geometric discrepancy: 0.0853
The information below is about IL_4WF9_021
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

5E7K|1|14|G|674
5E7K|1|14|A|675
5E7K|1|14|A|676
5E7K|1|14|A|677
5E7K|1|14|C|678
*
5E7K|1|14|G|799
5E7K|1|14|A|800
5E7K|1|14|G|801
5E7K|1|14|A|802
5E7K|1|14|U|803
5E7K|1|14|A|804
5E7K|1|14|G|805
5E7K|1|14|C|806

Current chains

Chain 14
23S rRNA

Nearby chains

Chain 35
50S ribosomal protein L15
Chain 39
50S ribosomal protein L4

Coloring options:


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