IL_5E7K_089

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

5E7K|1|14|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_089 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.2915

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5E7K|1|14|C|844
5E7K|1|14|G|845
5E7K|1|14|C|846
*
5E7K|1|14|G|931
5E7K|1|14|G|932
5E7K|1|14|A|933
5E7K|1|14|G|934

Current chains

Chain 14

23S rRNA

Nearby chains

Chain H5

50S ribosomal protein L30