IL_5E7K_100

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

5E7K|1|14|U|1142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_100 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1158

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5E7K|1|14|C|1018
5E7K|1|14|U|1019
5E7K|1|14|A|1020
5E7K|1|14|A|1021
5E7K|1|14|G|1022
5E7K|1|14|U|1023
5E7K|1|14|G|1024
*
5E7K|1|14|C|1140
5E7K|1|14|U|1141
5E7K|1|14|U|1142
5E7K|1|14|A|1142|||A
5E7K|1|14|A|1143
5E7K|1|14|G|1144

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 59

50S ribosomal protein L6