3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAC*GC
Length
5 nucleotides
Bulged bases
5E7K|1|14|A|1220
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5E7K_106 not in the Motif Atlas
Homologous match to IL_7RQB_048
Geometric discrepancy: 0.0964
The information below is about IL_7RQB_048
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

5E7K|1|14|G|1219
5E7K|1|14|A|1220
5E7K|1|14|C|1221
*
5E7K|1|14|G|1229|||A
5E7K|1|14|C|1230

Current chains

Chain 14
23S rRNA

Nearby chains

Chain 85
50S ribosomal protein L20
Chain 95
50S ribosomal protein L21

Coloring options:


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