IL_5E7K_107

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_107 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0481

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5E7K|1|14|A|1262
5E7K|1|14|U|1263
5E7K|1|14|G|1264
5E7K|1|14|A|1265
5E7K|1|14|G|1266
5E7K|1|14|U|1267
5E7K|1|14|A|1268
5E7K|1|14|A|1269
*
5E7K|1|14|U|2011
5E7K|1|14|G|2012
5E7K|1|14|A|2013
5E7K|1|14|A|2014
5E7K|1|14|A|2015
5E7K|1|14|U|2016
5E7K|1|14|U|2017

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain A5

50S ribosomal protein L22

Chain J5

50S ribosomal protein L32