3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
5E7K|1|14|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5E7K_127 not in the Motif Atlas
Geometric match to IL_7RQB_068
Geometric discrepancy: 0.113
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

5E7K|1|14|C|1686
5E7K|1|14|G|1687
5E7K|1|14|U|1688
5E7K|1|14|A|1689
5E7K|1|14|A|1690
5E7K|1|14|C|1691
*
5E7K|1|14|G|1696
5E7K|1|14|G|1697
5E7K|1|14|A|1698
5E7K|1|14|G|1699
5E7K|1|14|A|1700
5E7K|1|14|A|1701
5E7K|1|14|G|1702

Current chains

Chain 14
23S rRNA

Nearby chains

Chain 19
50S ribosomal protein L2
Chain 1G
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3273 s