IL_5E7K_139

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGA,UCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_139 not in the Motif Atlas

Geometric match to IL_3R1C_032

Geometric discrepancy: 0.2043

The information below is about IL_3R1C_032

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_08424.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

68

Unit IDs

5E7K|1|14|G|2052
5E7K|1|14|G|2053
5E7K|1|14|A|2054
*
5E7K|1|14|U|2615
5E7K|1|14|C|2616
5E7K|1|14|C|2617

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain J5

50S ribosomal protein L32