3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UGG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5E7K_145 not in the Motif Atlas
Geometric match to IL_4V88_424
Geometric discrepancy: 0.2542
The information below is about IL_4V88_424
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

5E7K|1|14|U|2099
5E7K|1|14|G|2100
5E7K|1|14|G|2101
*
5E7K|1|14|C|2188
5E7K|1|14|U|2189
5E7K|1|14|G|2190

Current chains

Chain 14
23S rRNA

Nearby chains

Chain 69
50S ribosomal protein L9

Coloring options:


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