IL_5E7K_148

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCUAGGAUAGGUGGGAGC*GCGCCGGUGAAUACCACCC

Length

37 nucleotides

Bulged bases

5E7K|1|14|C|2111, 5E7K|1|14|U|2113, 5E7K|1|14|G|2166, 5E7K|1|14|U|2167

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5E7K|1|14|G|2110
5E7K|1|14|C|2111
5E7K|1|14|U|2113
5E7K|1|14|A|2114
5E7K|1|14|G|2115
5E7K|1|14|G|2116
5E7K|1|14|A|2117
5E7K|1|14|U|2118
5E7K|1|14|A|2119
5E7K|1|14|G|2120
5E7K|1|14|G|2121
5E7K|1|14|U|2122
5E7K|1|14|G|2123
5E7K|1|14|G|2124
5E7K|1|14|G|2125
5E7K|1|14|A|2126
5E7K|1|14|G|2127
5E7K|1|14|C|2128
*
5E7K|1|14|G|2160
5E7K|1|14|C|2161
5E7K|1|14|G|2162
5E7K|1|14|C|2163
5E7K|1|14|C|2164
5E7K|1|14|G|2165
5E7K|1|14|G|2166
5E7K|1|14|U|2167
5E7K|1|14|G|2168
5E7K|1|14|A|2170
5E7K|1|14|A|2171
5E7K|1|14|U|2172
5E7K|1|14|A|2173
5E7K|1|14|C|2174
5E7K|1|14|C|2175
5E7K|1|14|A|2176
5E7K|1|14|C|2177
5E7K|1|14|C|2178
5E7K|1|14|C|2179

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA

Chain 79

50S ribosomal protein L1