IL_5E7K_198

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

5E7K|1|1G|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_198 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1579

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5E7K|1|1G|G|409
5E7K|1|1G|G|410
5E7K|1|1G|A|411
5E7K|1|1G|A|412
5E7K|1|1G|G|413
5E7K|1|1G|A|414
5E7K|1|1G|A|415
5E7K|1|1G|G|416
*
5E7K|1|1G|U|427
5E7K|1|1G|G|428
5E7K|1|1G|U|429
5E7K|1|1G|A|430
5E7K|1|1G|A|431
5E7K|1|1G|A|432
5E7K|1|1G|C|433

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 32

30S ribosomal protein S4