IL_5E7K_271

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_271 not in the Motif Atlas

Homologous match to IL_4WF9_028

Geometric discrepancy: 0.0913

The information below is about IL_4WF9_028

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

5E7K|1|1H|C|837
5E7K|1|1H|C|838
*
5E7K|1|1H|G|940
5E7K|1|1H|A|941
5E7K|1|1H|G|942

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 78

50S ribosomal protein L15

Chain Q8

50S ribosomal protein L35