IL_5E7K_273

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_273 not in the Motif Atlas

Geometric match to IL_7RQB_026

Geometric discrepancy: 0.1105

The information below is about IL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94165.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5E7K|1|1H|C|846
5E7K|1|1H|U|847
5E7K|1|1H|G|848
5E7K|1|1H|A|849
5E7K|1|1H|C|850
*
5E7K|1|1H|G|928
5E7K|1|1H|G|929
5E7K|1|1H|U|930
5E7K|1|1H|G|931

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain L8

50S ribosomal protein L30