3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUC*GGC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5E7K_329 not in the Motif Atlas
Geometric match to IL_6E7L_001
Geometric discrepancy: 0.2088
The information below is about IL_6E7L_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

5E7K|1|1H|G|2101
5E7K|1|1H|U|2102
5E7K|1|1H|C|2103
*
5E7K|1|1H|G|2186
5E7K|1|1H|G|2187
5E7K|1|1H|C|2188

Current chains

Chain 1H
23S rRNA

Nearby chains

Chain 71
50S ribosomal protein L1

Coloring options:


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