3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GCGUAGGAUAG*CC
Length
13 nucleotides
Bulged bases
5E7K|1|1H|U|2113
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5E7K_332 not in the Motif Atlas
Geometric match to IL_1KXK_003
Geometric discrepancy: 0.2264
The information below is about IL_1KXK_003
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

5E7K|1|1H|G|2110
5E7K|1|1H|C|2111
5E7K|1|1H|G|2112
5E7K|1|1H|U|2113
5E7K|1|1H|A|2114
5E7K|1|1H|G|2115
5E7K|1|1H|G|2116
5E7K|1|1H|A|2117
5E7K|1|1H|U|2118
5E7K|1|1H|A|2119
5E7K|1|1H|G|2120
*
5E7K|1|1H|C|2178
5E7K|1|1H|C|2179

Current chains

Chain 1H
23S rRNA

Nearby chains

Chain 3K
Transfer RNA; tRNA
Chain 71
50S ribosomal protein L1

Coloring options:


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