IL_5E7K_332

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5E7K|1|1H|U|2113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_332 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2264

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5E7K|1|1H|G|2110
5E7K|1|1H|C|2111
5E7K|1|1H|G|2112
5E7K|1|1H|U|2113
5E7K|1|1H|A|2114
5E7K|1|1H|G|2115
5E7K|1|1H|G|2116
5E7K|1|1H|A|2117
5E7K|1|1H|U|2118
5E7K|1|1H|A|2119
5E7K|1|1H|G|2120
*
5E7K|1|1H|C|2178
5E7K|1|1H|C|2179

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 3K

Transfer RNA; tRNA

Chain 71

50S ribosomal protein L1