IL_5E7K_358

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGG*CCAG

Length

7 nucleotides

Bulged bases

5E7K|1|1J|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_358 not in the Motif Atlas

Geometric match to IL_7A0S_112

Geometric discrepancy: 0.3957

The information below is about IL_7A0S_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5E7K|1|1J|C|17
5E7K|1|1J|G|18
5E7K|1|1J|G|19
*
5E7K|1|1J|C|64
5E7K|1|1J|C|65
5E7K|1|1J|A|66
5E7K|1|1J|G|67

Current chains

Chain 1J

5S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 65

50S ribosomal protein L18

Chain D5

50S ribosomal protein L25