IL_5E7K_366

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCA,UGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_366 not in the Motif Atlas

Homologous match to IL_4V9K_064

Geometric discrepancy: 0.3974

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5E7K|1|1L|G|49
5E7K|1|1L|C|50
5E7K|1|1L|A|51
*
5E7K|1|1L|U|63
5E7K|1|1L|G|64
5E7K|1|1L|C|65

Current chains

Chain 1L

tRNALys

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA