IL_5E7K_366
3D structure
- PDB id
- 5E7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCA*UGC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GCA,UGC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5E7K_366 not in the Motif Atlas
- Homologous match to IL_4V9K_064
- Geometric discrepancy: 0.3974
- The information below is about IL_4V9K_064
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
5E7K|1|1L|G|49
5E7K|1|1L|C|50
5E7K|1|1L|A|51
*
5E7K|1|1L|U|63
5E7K|1|1L|G|64
5E7K|1|1L|C|65
Current chains
- Chain 1L
- tRNALys
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: