IL_5E7K_381

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E7K_381 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0717

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5E7K|1|14|G|1666
5E7K|1|14|G|1667
5E7K|1|14|A|1668
5E7K|1|14|A|1669
5E7K|1|14|C|1670
5E7K|1|14|U|1671
5E7K|1|14|C|1672
5E7K|1|14|U|1673
5E7K|1|14|G|1674
*
5E7K|1|14|C|1990
5E7K|1|14|U|1991
5E7K|1|14|G|1992
5E7K|1|14|U|1993
5E7K|1|14|C|1994

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 25

50S ribosomal protein L14

Chain 29

50S ribosomal protein L3