IL_5E81_021
3D structure
- PDB id
- 5E81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGACG*CGGUAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5E81_021 not in the Motif Atlas
- Geometric match to IL_4LFB_018
- Geometric discrepancy: 0.1496
- The information below is about IL_4LFB_018
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
5E81|1|13|G|446
5E81|1|13|G|447
5E81|1|13|A|448
5E81|1|13|C|449
5E81|1|13|G|450
*
5E81|1|13|C|483
5E81|1|13|G|484
5E81|1|13|G|485
5E81|1|13|U|486
5E81|1|13|A|487
5E81|1|13|C|488
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 3E
- 30S ribosomal protein S4
- Chain 69
- 50S ribosomal protein L9
- Chain 7I
- 30S ribosomal protein S16
Coloring options: