IL_5E81_088

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

5E81|1|14|G|776, 5E81|1|14|A|788, 5E81|1|14|A|789, 5E81|1|14|C|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_088 not in the Motif Atlas

Geometric match to IL_7RQB_023

Geometric discrepancy: 0.0739

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

5E81|1|14|G|775
5E81|1|14|G|776
5E81|1|14|A|777
*
5E81|1|14|U|787
5E81|1|14|A|788
5E81|1|14|A|789
5E81|1|14|C|790
5E81|1|14|C|791

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 39

50S ribosomal protein L4

Chain A5

50S ribosomal protein L22

Chain L5

50S ribosomal protein L34