IL_5E81_121

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_121 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1166

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5E81|1|14|A|1469
5E81|1|14|G|1470
5E81|1|14|A|1471
5E81|1|14|A|1472
5E81|1|14|G|1473
*
5E81|1|14|U|1520
5E81|1|14|G|1521
5E81|1|14|G|1522
5E81|1|14|U|1523

Current chains

Chain 14

23S ribosomal RNA

Nearby chains