IL_5E81_131

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

5E81|1|14|G|1801, 5E81|1|14|G|1816, 5E81|1|14|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_131 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0456

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5E81|1|14|U|1798
5E81|1|14|G|1799
5E81|1|14|C|1800
5E81|1|14|G|1801
5E81|1|14|A|1802
5E81|1|14|A|1803
5E81|1|14|C|1804
*
5E81|1|14|G|1813
5E81|1|14|G|1814
5E81|1|14|A|1815
5E81|1|14|G|1816
5E81|1|14|G|1817
5E81|1|14|U|1818
5E81|1|14|A|1819
5E81|1|14|U|1820
5E81|1|14|A|1821

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA