IL_5E81_165

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_165 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.1671

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5E81|1|14|G|2588
5E81|1|14|A|2589
5E81|1|14|A|2590
*
5E81|1|14|U|2604
5E81|1|14|U|2605
5E81|1|14|C|2606

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1L

Transfer RNA; tRNA

Chain 2L

Transfer RNA; tRNA