IL_5E81_186

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

5E81|1|1G|C|48, 5E81|1|1G|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_186 not in the Motif Atlas

Homologous match to IL_4LFB_003

Geometric discrepancy: 0.0907

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5E81|1|1G|C|47
5E81|1|1G|C|48
5E81|1|1G|U|49
5E81|1|1G|A|50
5E81|1|1G|A|51
5E81|1|1G|G|52
*
5E81|1|1G|U|359
5E81|1|1G|A|360
5E81|1|1G|G|361

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 3A

30S ribosomal protein S12