IL_5E81_238

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_238 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3696

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5E81|1|1G|C|1259
5E81|1|1G|C|1260
5E81|1|1G|A|1261
5E81|1|1G|C|1262
*
5E81|1|1G|G|1273
5E81|1|1G|G|1274
5E81|1|1G|A|1275
5E81|1|1G|G|1276

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains