IL_5E81_252
3D structure
- PDB id
- 5E81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGGAG*CGUGGAUC
- Length
- 13 nucleotides
- Bulged bases
- 5E81|1|1H|G|101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5E81_252 not in the Motif Atlas
- Homologous match to IL_7RQB_004
- Geometric discrepancy: 0.0408
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
5E81|1|1H|G|81
5E81|1|1H|G|82
5E81|1|1H|G|83
5E81|1|1H|A|84
5E81|1|1H|G|85
*
5E81|1|1H|C|97
5E81|1|1H|G|98
5E81|1|1H|U|99
5E81|1|1H|G|101
5E81|1|1H|G|102
5E81|1|1H|A|103
5E81|1|1H|U|104
5E81|1|1H|C|105
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain G8
- 50S ribosomal protein L24
- Chain K8
- 50S ribosomal protein L29
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