IL_5E81_267

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5E81|1|1H|G|801, 5E81|1|1H|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_267 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0966

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5E81|1|1H|G|674
5E81|1|1H|A|675
5E81|1|1H|A|676
5E81|1|1H|A|677
5E81|1|1H|C|678
*
5E81|1|1H|G|799
5E81|1|1H|A|800
5E81|1|1H|G|801
5E81|1|1H|A|802
5E81|1|1H|U|803
5E81|1|1H|A|804
5E81|1|1H|G|805
5E81|1|1H|C|806

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15