IL_5E81_288

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

5E81|1|1H|U|1142, 5E81|1|1H|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_288 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.0927

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5E81|1|1H|C|1018
5E81|1|1H|U|1019
5E81|1|1H|A|1020
5E81|1|1H|A|1021
5E81|1|1H|G|1022
5E81|1|1H|U|1023
5E81|1|1H|G|1024
*
5E81|1|1H|C|1140
5E81|1|1H|U|1141
5E81|1|1H|U|1142
5E81|1|1H|A|1142|||A
5E81|1|1H|A|1143
5E81|1|1H|G|1144

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 58

50S ribosomal protein L13