IL_5E81_296

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

5E81|1|1H|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_296 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.1998

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5E81|1|1H|C|1202
5E81|1|1H|G|1203
5E81|1|1H|A|1204
5E81|1|1H|U|1205
5E81|1|1H|G|1206
*
5E81|1|1H|U|1240
5E81|1|1H|A|1241
5E81|1|1H|A|1242
5E81|1|1H|G|1243

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15