IL_5E81_337

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5E81|1|1H|C|2111, 5E81|1|1H|U|2113, 5E81|1|1H|A|2117, 5E81|1|1H|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_337 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.3013

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5E81|1|1H|G|2110
5E81|1|1H|C|2111
5E81|1|1H|G|2112
5E81|1|1H|U|2113
5E81|1|1H|A|2114
5E81|1|1H|G|2115
5E81|1|1H|G|2116
5E81|1|1H|A|2117
5E81|1|1H|U|2118
5E81|1|1H|A|2119
5E81|1|1H|G|2120
*
5E81|1|1H|C|2178
5E81|1|1H|C|2179

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA

Chain 71

50S ribosomal protein L1