IL_5E81_338

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUGGGAGC*GCGCCGGUGAAAUACCAC

Length

26 nucleotides

Bulged bases

5E81|1|1H|U|2167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5E81|1|1H|G|2121
5E81|1|1H|U|2122
5E81|1|1H|G|2123
5E81|1|1H|G|2124
5E81|1|1H|G|2125
5E81|1|1H|A|2126
5E81|1|1H|G|2127
5E81|1|1H|C|2128
*
5E81|1|1H|G|2160
5E81|1|1H|C|2161
5E81|1|1H|G|2162
5E81|1|1H|C|2163
5E81|1|1H|C|2164
5E81|1|1H|G|2165
5E81|1|1H|G|2166
5E81|1|1H|U|2167
5E81|1|1H|G|2168
5E81|1|1H|A|2169
5E81|1|1H|A|2170
5E81|1|1H|A|2171
5E81|1|1H|U|2172
5E81|1|1H|A|2173
5E81|1|1H|C|2174
5E81|1|1H|C|2175
5E81|1|1H|A|2176
5E81|1|1H|C|2177

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA

Chain 71

50S ribosomal protein L1