IL_5E81_360

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

5E81|1|1H|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_360 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.0693

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5E81|1|1H|C|2695
5E81|1|1H|U|2696
*
5E81|1|1H|A|2711
5E81|1|1H|U|2712
5E81|1|1H|A|2712|||A
5E81|1|1H|A|2713
5E81|1|1H|G|2714

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 98

50S ribosomal protein L17

Chain B8

50S ribosomal protein L19