IL_5E81_361

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

5E81|1|1H|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_361 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0629

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5E81|1|1H|G|2737
5E81|1|1H|A|2738
5E81|1|1H|U|2739
5E81|1|1H|A|2740
5E81|1|1H|A|2741
5E81|1|1H|C|2742
*
5E81|1|1H|G|2762
5E81|1|1H|G|2763
5E81|1|1H|A|2764
5E81|1|1H|A|2765
5E81|1|1H|G|2766
5E81|1|1H|C|2767

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 58

50S ribosomal protein L13