IL_5E81_395

3D structure

PDB id

5E81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5E81_395 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0519

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5E81|1|1H|G|1666
5E81|1|1H|G|1667
5E81|1|1H|A|1668
5E81|1|1H|A|1669
5E81|1|1H|C|1670
5E81|1|1H|U|1671
5E81|1|1H|C|1672
5E81|1|1H|U|1673
5E81|1|1H|G|1674
*
5E81|1|1H|C|1990
5E81|1|1H|U|1991
5E81|1|1H|G|1992
5E81|1|1H|U|1993
5E81|1|1H|C|1994

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 68

50S ribosomal protein L14