IL_5EL4_008

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_008 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.112

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

5EL4|1|13|C|132
5EL4|1|13|U|133
5EL4|1|13|A|134
5EL4|1|13|C|135
5EL4|1|13|C|136
*
5EL4|1|13|G|227
5EL4|1|13|A|228
5EL4|1|13|U|229
5EL4|1|13|G|230

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7I

30S ribosomal protein S16

Chain BI

30S ribosomal protein S20