3D structure

PDB id
5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CUACC*GAUG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL4_008 not in the Motif Atlas
Homologous match to IL_5J7L_010
Geometric discrepancy: 0.112
The information below is about IL_5J7L_010
Detailed Annotation
Minor groove platform related
Broad Annotation
Minor groove platform related
Motif group
IL_64231.5
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

5EL4|1|13|C|132
5EL4|1|13|U|133
5EL4|1|13|A|134
5EL4|1|13|C|135
5EL4|1|13|C|136
*
5EL4|1|13|G|227
5EL4|1|13|A|228
5EL4|1|13|U|229
5EL4|1|13|G|230

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 7I
30S ribosomal protein S16
Chain BI
30S ribosomal protein S20

Coloring options:


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