3D structure

PDB id
5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
5EL4|1|14|G|801, 5EL4|1|14|G|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL4_080 not in the Motif Atlas
Geometric match to IL_4WF9_021
Geometric discrepancy: 0.0896
The information below is about IL_4WF9_021
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

5EL4|1|14|G|674
5EL4|1|14|A|675
5EL4|1|14|A|676
5EL4|1|14|A|677
5EL4|1|14|C|678
*
5EL4|1|14|G|799
5EL4|1|14|A|800
5EL4|1|14|G|801
5EL4|1|14|A|802
5EL4|1|14|U|803
5EL4|1|14|A|804
5EL4|1|14|G|805
5EL4|1|14|C|806

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 35
50S ribosomal protein L15
Chain 39
50S ribosomal protein L4

Coloring options:


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