IL_5EL4_185

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

ACCC*GUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_185 not in the Motif Atlas

Geometric match to IL_8E4X_002

Geometric discrepancy: 0.3981

The information below is about IL_8E4X_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5EL4|1|1G|A|185
5EL4|1|1G|C|186
5EL4|1|1G|C|186|||A
5EL4|1|1G|C|186|||B
*
5EL4|1|1G|G|191|||E
5EL4|1|1G|U|191|||F
5EL4|1|1G|U|192

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain BA

30S ribosomal protein S20